flat_cluster(method, threshold, matrix[, ...]) |
Carry out a flat cluster analysis based on linkage algorithms. |
flat_upgma(threshold, matrix[, taxa, revert]) |
Carry out a flat cluster analysis based on the UPGMA algorithm (Sokal1958). |
fuzzy(threshold, matrix, taxa[, method, revert]) |
Create fuzzy cluster of a given distance matrix. |
link_clustering(threshold, matrix, taxa[, ...]) |
Carry out a link clustering analysis using the method by Ahn2010. |
mcl(threshold, matrix, taxa[, max_steps, ...]) |
Carry out a clustering using the MCL algorithm (Dongen2000). |
neighbor(matrix, taxa[, distances]) |
Function clusters data according to the Neighbor-Joining algorithm (Saitou1987). |
upgma(matrix, taxa[, distances]) |
Carry out a cluster analysis based on the UPGMA algorithm (Sokal1958). |
infomap_clustering(threshold, matrix[, ...]) |
Compute the Infomap clustering analysis of the data. |
affinity_propagation(threshold, matrix, taxa) |
Compute affinity propagation from the matrix. |
