Pairwise Alignment (pairwise)

Functions

nw_align(seqA, seqB[, scorer, gap])	Carry out the traditional Needleman-Wunsch algorithm.
sw_align(seqA, seqB[, scorer, gap])	Carry out the traditional Smith-Waterman algorithm.
we_align(seqA, seqB[, scorer, gap])	Carry out the traditional Waterman-Eggert algorithm.
edit_dist(seqA, seqB[, normalized, restriction])	Return the edit distance between two strings.
SCA(infile, **keywords)	Method returns alignment objects depending on input file or input data.

Classes

Pairwise(seqs[, seqB])	Basic class for the handling of pairwise sequence alignments (PSA).
PSA(infile, **keywords)	Basic class for dealing with the pairwise alignment of sequences.