lingpy.tests.align package¶
Submodules¶
lingpy.tests.align.test_multiple module¶
Testing multiple module.
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class
lingpy.tests.align.test_multiple.Tests(methodName='runTest')¶ Bases:
unittest.case.TestCase-
setUp()¶
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test___get__()¶
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test_get_local_peaks()¶
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test_get_pairwise_alignments()¶
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test_get_peaks()¶
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test_get_pid()¶
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test_iterate_all_sequences()¶
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test_iterate_clusters()¶
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test_iterate_orphans()¶
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test_iterate_similar_gap_sites()¶
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test_lib_align()¶
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test_mult_align()¶
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test_prog_align()¶
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test_sum_of_pairs()¶
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test_swap_check()¶
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lingpy.tests.align.test_pairwise module¶
lingpy.tests.align.test_sca module¶
Test the SCA module.
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class
lingpy.tests.align.test_sca.TestAlignments(methodName='runTest')¶ Bases:
lingpy.tests.util.WithTempDir-
setUp()¶
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test_align()¶
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test_get_confidence()¶
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test_get_consensus()¶
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test_ipa2tokens()¶
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test_output()¶
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class
lingpy.tests.align.test_sca.TestMSA(methodName='runTest')¶ Bases:
lingpy.tests.util.WithTempDir-
test_output()¶
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class
lingpy.tests.align.test_sca.TestPSA(methodName='runTest')¶ Bases:
lingpy.tests.util.WithTempDir-
test_output()¶
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lingpy.tests.align.test_sca.test_get_consensus()¶
